ExperimentSetReplicate

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ExperimentSet4DNESKB23P1T
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 6 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEX21JLZ2Y
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFIFN9P7GF
read positions (bam)
4.07 GB
File
4DNFI6OGEQGL
read counts (plus) (bw)
191.08 MB
File
4DNFIEQ4XVBN
read counts (minus) (bw)
182.38 MB
File
4DNFI281LHWN
gene expression (tsv)
10.5 MB
File
4DNFIA9FQ3LD
isoform expression (tsv)
29.85 MB
Experiment
4DNEXHVOV618
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFI3K4L5BE
read positions (bam)
4.47 GB
File
4DNFITUKUFUJ
read counts (plus) (bw)
206.66 MB
File
4DNFI3UC792V
read counts (minus) (bw)
196.71 MB
File
4DNFI7TXCLRR
gene expression (tsv)
10.51 MB
File
4DNFIRFX4E38
isoform expression (tsv)
29.86 MB
Experiment
4DNEXYENNP27
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFI5VD8N82
read positions (bam)
4.51 GB
File
4DNFIASVF3UH
read counts (plus) (bw)
215.08 MB
File
4DNFI2XZFTA5
read counts (minus) (bw)
204.84 MB
File
4DNFIJJQ85S1
gene expression (tsv)
10.51 MB
File
4DNFI3ZZ642O
isoform expression (tsv)
29.85 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX21JLZ2Y
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFIFN9P7GF
39.9m
35.43m
Experiment
4DNEXHVOV618
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFI3K4L5BE
43.6m
38.56m
Experiment
4DNEXYENNP27
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFI5VD8N82
45.17m
40.27m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX21JLZ2Y
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFI281LHWN
42.09m
2.23k
Experiment
4DNEXHVOV618
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFI7TXCLRR
45.35m
3.84k
Experiment
4DNEXYENNP27
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFIJJQ85S1
46.13m
2.8k