ExperimentSetReplicate

ExperimentSet4DNESK9QA5IH
released
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Input control for RAD21/PDS5 ChIP-seq on DMSO treated dTAG-NIPBL clone D7

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-NIPBL hTERT-RPE-1 - clone D7
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: None (Control)

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEX54REMHY
Bio Rep 1, Tec Rep 1
ChIP-seq on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
4DNFI4E27BOU
read positions (bed)
396.08 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEX54REMHY
Bio Rep 1, Tec Rep 1
ChIP-seq on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
Read Positions (bed)
4DNFI4E27BOU
0.78
0.76
23.65m