ExperimentSetReplicate

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ExperimentSet4DNESK5CRXKT
released
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RNA FISH of Zfpm1 and Pabpc1 intronic regions in G1E-ER4 cells differentiated for 24 hours treated for 60min with 250nM JQ1

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:122282141-122337247 mouse region targeted by Alexa Fluor 594-labeled custom oligos
ch02
GRCm38:15:36595658-36608973 mouse region targeted by Cy3-labeled custom oligos

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXFGCDH6G
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFID293PFJ
csv
37.76 kB
File
4DNFIVKXZINS
coordinates (csv)
12.58 kB
File
4DNFIE7XFDU8
csv
32.43 kB
File
4DNFI47IZ6TF
coordinates (csv)
8.96 kB