ExperimentSetReplicate

ExperimentSet4DNESJWSHRA5
released
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Hi-C on single positive CD8 T cells isolated from thymus

   May 2nd, 2023 at 9:13pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
CD8-positive, alpha-beta thymocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESJWSHRA5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIW4TFDXH
134.87m
63.903%
16.224%
19.874%
Experiment
4DNEX8U91UL4
Bio Rep 1, Tec Rep 1
in situ Hi-C on CD8-positive, alpha-beta thymocyte with MboI
File
Contact List-replicate (pairs)
4DNFIB54P8UN
116.41m
63.807%
16.131%
20.062%
Experiment
4DNEXINSCLFF
Bio Rep 2, Tec Rep 1
in situ Hi-C on CD8-positive, alpha-beta thymocyte with MboI
File
Contact List-replicate (pairs)
4DNFIZUA7ARB
18.46m
64.505%
16.811%
18.684%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJWSHRA5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUIC468P
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8U91UL4
Bio Rep 1, Tec Rep 1
in situ Hi-C on CD8-positive, alpha-beta thymocyte with MboI
File
Alignments (bam)
4DNFI8V1598Z
201.56m
6.361%
11.094%
14.609%
10.183%
0.108%
Experiment
4DNEXINSCLFF
Bio Rep 2, Tec Rep 1
in situ Hi-C on CD8-positive, alpha-beta thymocyte with MboI
File
Alignments (bam)
4DNFIQPGV8ZK
28.38m
5.154%
11.167%
8.463%
10.151%
0.116%