ExperimentSetReplicate

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ExperimentSet4DNESJPN63UX
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 45 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXTCQPIG8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIZTLN1HA
read positions (bam)
4.4 GB
File
4DNFIEQVFUEJ
read counts (plus) (bw)
179.95 MB
File
4DNFII6Z4TWE
read counts (minus) (bw)
175.45 MB
File
4DNFIAK4M6QW
gene expression (tsv)
10.49 MB
File
4DNFIXT6BP11
isoform expression (tsv)
29.85 MB
Experiment
4DNEXP3JHTO5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIU7MTNT8
read positions (bam)
2.96 GB
File
4DNFIO4BJ8Z6
read counts (plus) (bw)
133.16 MB
File
4DNFIHHFXMW6
read counts (minus) (bw)
130.03 MB
File
4DNFIA3W6WKH
gene expression (tsv)
10.48 MB
File
4DNFIY8CP64C
isoform expression (tsv)
29.81 MB
Experiment
4DNEXKOUV56E
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI8A1CM7L
read positions (bam)
5.49 GB
File
4DNFI9QMU84X
read counts (plus) (bw)
212.78 MB
File
4DNFIXL6ATHI
read counts (minus) (bw)
208.07 MB
File
4DNFIB2G6ZA8
gene expression (tsv)
10.51 MB
File
4DNFIV6I52PM
isoform expression (tsv)
29.87 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXTCQPIG8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIZTLN1HA
43.71m
38.57m
Experiment
4DNEXP3JHTO5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIU7MTNT8
28.17m
24.74m
Experiment
4DNEXKOUV56E
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI8A1CM7L
50.23m
43.22m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXTCQPIG8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIAK4M6QW
47.18m
2.61k
Experiment
4DNEXP3JHTO5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIA3W6WKH
30.15m
1.59k
Experiment
4DNEXKOUV56E
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIB2G6ZA8
41.89m
2.11k