ExperimentSetReplicate

ExperimentSet4DNESJKJ16W6
released
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Multiplexed FISH of chromosome V of N2 paternal chromosomes in F1 hybrid embryos (HI mother and N2 father, HIXN2) of C. elegans, which has been marked by N2 specific probes targeting N2 specific regions

   June 17th, 2025 at 9:26pm
Source Publication
Multiplex DNA fluorescence in situ hybridization to analyze maternal vs. paternal C. elegans chromosomes.
Gutnik S, You JE, et al., Genome biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
C. elegans
Sample Type 
whole organisms
Sample 
multicellular organism
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, N2 strain-specifc 21 regions interspersed along 21 TADs in Chr V in C.elegans (roundworm)
Channel
Imaging Rounds
Path
 
ch00
-
Chromosomes targeted by DAPI
ch01
1-13
N2 strain-specific regions (interspersed between 21 TADs) imaged on ChrV
ch02
-
fiducial beads

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXMBY7OOA
Bio Rep 1, Tec Rep 1
multiplexed FISH on multicellular organism
File
4DNFIW7DATAO
FOF-CT - DNA-spot/trace core (csv)
884.97 kB