ExperimentSetReplicate

ExperimentSet4DNESITQCT9N
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 3 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESITQCT9N
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI693PN1L
53.12m
47.447%
23.626%
28.927%
Experiment
4DNEX4LYNEUN
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI76URT33
53.12m
47.447%
23.626%
28.927%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4LYNEUN
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIAHCFUTD
107.06m
14.828%
23.409%
12.14%
0.007%
0.194%