ExperimentSetReplicate

ExperimentSet4DNESINBA78I
released
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in situ Hi-C on primary cardiomyocytes from the left atrium - donor 01176

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left atrium
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESINBA78I
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI345WNMW
696.91m
40.615%
27.368%
32.017%
Experiment
4DNEXKNE956I
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFI3HPPTMP
311.09m
40.161%
27.634%
32.205%
Experiment
4DNEXW2177M9
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFI2C71B71
385.82m
40.981%
27.154%
31.865%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESINBA78I
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIY3RBYMQ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKNE956I
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIYVG6GCX
535.23m
12.384%
17.228%
4.488%
7.777%
0.33%
Experiment
4DNEXW2177M9
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIZANEEYO
683.07m
12.48%
18.308%
6.513%
6.216%
0.326%