ExperimentSetReplicate

ExperimentSet4DNESIGSQNXW
released
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Hi-C on Foxp3 domain-swap mutant (DSM) Treg cells isolated from thymus - genotype CD45+CD4+CD8-CD25+Foxp3-DSM

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Foxp3-Thy1.1 DSM
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESIGSQNXW
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5TKDH5J
155.63m
58.354%
18.802%
22.845%
Experiment
4DNEX24WRHHM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 DSM with MboI
File
Contact List-replicate (pairs)
4DNFIYNEOYJO
74.85m
57.88%
18.818%
23.302%
Experiment
4DNEX5S8QA8V
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 DSM with MboI
File
Contact List-replicate (pairs)
4DNFIL55OJXG
80.78m
58.793%
18.787%
22.421%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESIGSQNXW
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI4GP33LY
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX24WRHHM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 DSM with MboI
File
Alignments (bam)
4DNFIAGE8FC9
109.78m
4.948%
11.15%
7.986%
7.734%
0.137%
Experiment
4DNEX5S8QA8V
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 DSM with MboI
File
Alignments (bam)
4DNFIG2QTX5D
117.86m
4.901%
10.721%
8.144%
7.693%
0.127%