ExperimentSetReplicate

ExperimentSet4DNESIGSG46I
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Multiplexed FISH of chromosome V in homozygous embryos from HI strain of C. elegans

   June 17th, 2025 at 9:26pm
Source Publication
Multiplex DNA fluorescence in situ hybridization to analyze maternal vs. paternal C. elegans chromosomes.
Gutnik S, You JE, et al., Genome biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
C. elegans
Sample Type 
whole organisms
Sample 
multicellular organism
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 100 kb in 21 TADS on Chr V in C.elegans (roundworm), Chromosomes
Channel
Imaging Rounds
Path
 
ch00
-
Chromosomes targeted by DAPI
ch01
1-12
21 TADs (100kb central region) imaged on ChrV using ATTO 561 imaging probes
ch02
1-12
21 TADs (100kb central region) imaged on ChrV using Alexa Fluor 647 imaging probes
ch03
-
fiducial beads

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXSGHXJF9
Bio Rep 1, Tec Rep 1
multiplexed FISH on multicellular organism
File
4DNFIJQSTXSK
FOF-CT - DNA-spot/trace core (csv)
2.89 MB