ExperimentSetReplicate

ExperimentSet4DNESI74G82F
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 1.75 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESI74G82F
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFMKMR3O
66.28m
51.909%
14.592%
33.498%
Experiment
4DNEXSFKQ66J
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI6TZKAI7
66.28m
51.909%
14.592%
33.498%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXSFKQ66J
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIQ3A7DDW
140.49m
13.113%
23.365%
16.336%
0.004%
0.158%