ExperimentSetReplicate

ExperimentSet4DNESI2CRWG9
released
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RNA-seq on conventional T cells (Tcon cells) isolated from the spleen

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Tcon - spleen Foxp3-
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXF7C9B4M
Bio Rep 1, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Read Positions (bam)
4DNFINLJ8XV5
4.36m
4.01m
Experiment
4DNEXT29OPSR
Bio Rep 2, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Read Positions (bam)
4DNFINJ9XSG8
3.95m
3.62m
Experiment
4DNEXSLN4Z4O
Bio Rep 3, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Read Positions (bam)
4DNFISJJJRDR
3.46m
3.18m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXF7C9B4M
Bio Rep 1, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Gene Expression (tsv)
4DNFI4U144YZ
4.73m
8.19k
Experiment
4DNEXT29OPSR
Bio Rep 2, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Gene Expression (tsv)
4DNFI386MW8H
3.67m
121.98k
Experiment
4DNEXSLN4Z4O
Bio Rep 3, Tec Rep 1
RNA-seq on Tcon - spleen Foxp3-
File
Gene Expression (tsv)
4DNFI3Z5IE73
3.6m
8.83k