ExperimentSetReplicate

ExperimentSet4DNESHWXNLB4
released
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in situ Hi-C on cerebellar granule neurons with brd4 sgRNA isolated using FANS at day 14 after in vivo electroporation from dCas9-KRAB mouse postnatal day 20

   August 13th, 2025 at 3:35pm

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cerebellar granule neuron - 14 days old
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

11 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESHWXNLB4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1FO54GL
811.79m
57.516%
23.346%
19.139%
Experiment
4DNEXJRRYFWP
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIJU7B8X3
205.32m
58.002%
22.422%
19.576%
Experiment
4DNEXG3ELTNC
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIBIH99FQ
133.56m
54.35%
19.581%
26.069%
Experiment
4DNEX5W75GEN
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIR2ZDADW
277.65m
56.336%
26.367%
17.297%
Experiment
4DNEXSEKRLO8
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI7ISEH6E
289.04m
58.784%
22.295%
18.921%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESHWXNLB4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIT4LTAWH
100000; 250000; 500000; 1000000; 2500000