ExperimentSetReplicate

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ExperimentSet4DNESHTBSW8J
released
View JSON

CTCF input on untreated and unmodified WTC-11 iPSC cells differentiated for 20 days to cardiac myocytes.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQBQBZSI
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIS54Y9EA
read positions (bed)
1.15 GB
Experiment
4DNEXJ4WZH85
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI1L4WQ45
read positions (bed)
1.18 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXQBQBZSI
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIS54Y9EA
0.89
0.89
70.66m
Experiment
4DNEXJ4WZH85
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI1L4WQ45
0.87
0.87
72.05m