ExperimentSetReplicate

ExperimentSet4DNESHO2A854
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 4 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXHCT7BGP
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIJ2F7R2W
41.18m
36.79m
Experiment
4DNEXAQ7X96Q
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIDKXA27A
45.39m
40.28m
Experiment
4DNEX2DKT3YO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIVORH99Y
45.63m
40.68m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXHCT7BGP
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIL1VNIF1
44.53m
3.82k
Experiment
4DNEXAQ7X96Q
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIIIYBJ8I
51.31m
4.37k
Experiment
4DNEX2DKT3YO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIY42PH67
49.69m
1.95k