ExperimentSetReplicate

ExperimentSet4DNESHGVQ24X
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DNA Paint on HFF Htert cells with 3 loci

   October 11th, 2017 at 9:36pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:20012369-20177632 region, GRCh38:1:2370445-2570720 region, GRCh38:1:12708719-12865743 region
Sample Image 
DNA FISH sample image
View File Item - 4DNFIW8JKS6K
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:20012369-20177632 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:2370445-2570720 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESHGVQ24X
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXFYXBFXO
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIF7OQ31S
loci distances (txt)
427.7 kB
Experiment
4DNEXRS99BW1
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIMAGLOPA
loci distances (txt)
391.47 kB
Experiment
4DNEXC84PDEO
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIROI5JSB
loci distances (txt)
375.84 kB