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ExperimentSet4DNESH63QG5Y
released
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ATAC-seq on Monocytes of bone marrow from donor MCG028

   October 24th, 2024 at 9:41pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
MCG028 Monocytes of bone marrow
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

6 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESH63QG5Y
Multiple Experiments
File
4DNFIYFXEUS6
peaks (bigbed)
8 MB
File
4DNFI2EC4J1Q
conservative peaks (bigbed)
8 MB
File
4DNFIVFY8KSS
signal fold change (bw)
642.44 MB
Experiment
4DNEXQ5WA7AD
Bio Rep 1, Tec Rep 1
ATAC-seq on MCG028 Monocytes of bone marrow
File
4DNFI7MY1J3V
read positions (bed)
48.33 MB
Experiment
4DNEXO738239
Bio Rep 1, Tec Rep 2
ATAC-seq on MCG028 Monocytes of bone marrow
File
4DNFI3TWENZF
read positions (bed)
707.14 MB
Experiment
4DNEXYMX4CQ6
Bio Rep 1, Tec Rep 3
ATAC-seq on MCG028 Monocytes of bone marrow
File
4DNFIR5T5XSY
read positions (bed)
34.5 MB

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXQ5WA7AD
Bio Rep 1, Tec Rep 1
ATAC-seq on MCG028 Monocytes of bone marrow
File
Read Positions (bed)
4DNFI7MY1J3V
2.87%
0.96
0.96
3.01m
Experiment
4DNEXO738239
Bio Rep 1, Tec Rep 2
ATAC-seq on MCG028 Monocytes of bone marrow
File
Read Positions (bed)
4DNFI3TWENZF
2.93%
0.85
0.87
43.58m
Experiment
4DNEXYMX4CQ6
Bio Rep 1, Tec Rep 3
ATAC-seq on MCG028 Monocytes of bone marrow
File
Read Positions (bed)
4DNFIR5T5XSY
2.31%
0.96
0.96
2.15m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESH63QG5Y
Multiple Experiments
File
Peaks (bigbed)
4DNFIYFXEUS6
154.08k
0.0
1.0
0.67