ExperimentSetReplicate

ExperimentSet4DNESGT9VB1J
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ChIP-Seq: Hela-Kyoto cells SMC3 WAPL-depleted

   February 20th, 2019 at 6:20pm
Source Publication
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G, Varnai C, et al., The EMBO journal 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
RNAi
Assay Details 
Target: SMC3 protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXKWFYHPQ
Bio Rep 1, Tec Rep 1
ChIP-seq against SMC3 protein on HeLa cell line
File
Read Positions (bed)
4DNFIEF5J2G1
0.54
0.5
7.45m
Experiment
4DNEXFEEFDCL
Bio Rep 2, Tec Rep 1
ChIP-seq against SMC3 protein on HeLa cell line
File
Read Positions (bed)
4DNFIB6LI41L
0.58
0.54
36.94m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESGT9VB1J
Multiple Experiments
File
Peaks (bigbed)
4DNFICLRE2I2
39.35k
1.17
1.11
0.13