ExperimentSetReplicate

ExperimentSet4DNESGQ1XP78
released
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in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 2.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESGQ1XP78
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIU8XRIFB
99.97m
47.11%
14.961%
37.929%
Experiment
4DNEXUO9DWNJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIS642WW5
99.97m
47.11%
14.961%
37.929%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESGQ1XP78
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI98F2HPJ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXUO9DWNJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIGOBVF4G
197.65m
13.669%
24.601%
11.145%
0.005%
0.182%