ExperimentSetReplicate

ExperimentSet4DNESGBU8XNK
released
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in situ Hi-C on DMSO treated hTert-RPE1 FKBP12F36V-Rad21 clone B3 - 24 hr

   October 17th, 2024 at 9:16pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-RAD21 hTERT-RPE-1 - clone B3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESGBU8XNK
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIZEX7BP9
226.96m
51.489%
39.961%
8.55%
Experiment
4DNEXSNV4KDI
Bio Rep 1, Tec Rep 1
in situ Hi-C on dTAG-RAD21 hTERT-RPE-1 - clone B3 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFILX2O8RA
241.99m
51.405%
39.422%
9.172%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESGBU8XNK
Multiple Experiments
File
Contact Matrix (mcool)
4DNFID1UUYSU
None