ExperimentSetReplicate

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ExperimentSet4DNESG8XK89Y
released
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Replicates of RNA-seq on CRISPR/cas9-modified Patski cells (Inv-Dxz4 clone a).

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXKITY4HC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIK4BUDPC
read positions (bam)
5.73 GB
File
4DNFITJE381A
read counts (bw)
157.67 MB
File
4DNFIDQH2CZM
gene expression (tsv)
11.54 MB
File
4DNFIJIWS1MH
isoform expression (tsv)
23.54 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXKITY4HC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIK4BUDPC
69.59m
61.48m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXKITY4HC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIDQH2CZM
49.15m
19.85k