ExperimentSetReplicate

ExperimentSet4DNESG8VCWA4
released
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in situ Hi-C on cerebellum from C57BL/6J mouse postnatal day 6

   March 26th, 2022 at 10:32pm
Source Publication
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
Zhao Z, Parra OP, et al., bioRxiv : the preprint server for biology 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
cerebellum - PND 6
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESG8VCWA4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFII4DUQKU
1.1 billion
58.351%
22.639%
19.009%
Experiment
4DNEX2C1J5T2
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Contact List-replicate (pairs)
4DNFIDHD6FRW
368.96m
58.31%
23.053%
18.637%
Experiment
4DNEXP81JLL5
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Contact List-replicate (pairs)
4DNFIL4BAM5B
374.82m
57.825%
23.358%
18.817%
Experiment
4DNEXQN2XOUV
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Contact List-replicate (pairs)
4DNFIYAKRAFG
359.43m
58.943%
21.466%
19.591%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESG8VCWA4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIXEXXMBW
50000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX2C1J5T2
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Alignments (bam)
4DNFINUQB6XL
798.12m
30.825%
20.772%
2.175%
0.0%
0.035%
Experiment
4DNEXP81JLL5
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Alignments (bam)
4DNFIDZOS8TY
829.4m
32.452%
20.259%
2.098%
0.0%
0.03%
Experiment
4DNEXQN2XOUV
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellum - PND 6 with MboI
File
Alignments (bam)
4DNFI3PBO9NA
829.96m
34.732%
19.955%
2.007%
0.0%
0.028%