ExperimentSetReplicate

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ExperimentSet4DNESG6I8TG1
released
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in situ Hi-C on wild-type WTC-11 iPSC undifferentiated

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESG6I8TG1
Multiple Experiments
File
4DNFIWLYZEGP
contact list-combined (pairs)
24.17 GB
File
4DNFILI6XOB5
contact matrix (hic)
6.05 GB
File
4DNFIUMP8ZZ6
contact matrix (mcool)
4.13 GB
File
4DNFIS69O3DK
compartments (bw)
203.24 kB
File
4DNFIAAXUCWR
boundaries (bed)
183.39 kB
File
4DNFIYBFHJRP
insulation score-diamond (bw)
7.94 MB
Experiment
4DNEX1AYWCTE
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 with DdeI and DpnII
File
4DNFI12LOCE7
alignments (bam)
292.98 GB
File
4DNFIKRKPPHU
contact list-replicate (pairs)
15.93 GB
Experiment
4DNEX1P3V84Q
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 with DdeI and DpnII
File
4DNFIBNXU984
alignments (bam)
152.61 GB
File
4DNFIFG5L42J
contact list-replicate (pairs)
9.96 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESG6I8TG1
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWLYZEGP
1.42 billion
41.538%
45.33%
13.133%
Experiment
4DNEX1AYWCTE
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIKRKPPHU
938.1m
41.478%
45.319%
13.203%
Experiment
4DNEX1P3V84Q
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIFG5L42J
589.87m
41.685%
43.18%
15.136%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESG6I8TG1
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUMP8ZZ6
None