ExperimentSetReplicate

ExperimentSet4DNESG62SAVA
released
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Chromatin tracing (ORCA) of a 3-Mb region at the chr3 locus in mESC CTCF-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX5L4MPMG
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFILD6TDR6
FOF-CT - DNA-spot/trace core (csv)
10.86 MB
File
4DNFIQSUNA94
FOF-CT - spot quality (csv)
3.09 MB
File
4DNFI3S5NRWZ
FOF-CT - trace data (csv)
30.74 kB
Experiment
4DNEXOLS8BYS
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIKXR227H
FOF-CT - DNA-spot/trace core (csv)
14.42 MB
File
4DNFISLKUVSU
FOF-CT - spot quality (csv)
4.11 MB
File
4DNFIQ82TQZ4
FOF-CT - trace data (csv)
42.33 kB
Experiment
4DNEXJ215XWF
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIW3V9CRO
FOF-CT - DNA-spot/trace core (csv)
23.16 MB
File
4DNFIOURMUAS
FOF-CT - spot quality (csv)
6.43 MB
File
4DNFIKSGFRGP
FOF-CT - trace data (csv)
62.12 kB
File
4DNFICUEQHA4
FOF-CT - cell data (csv)
85.86 kB