ExperimentSetReplicate

ExperimentSet4DNESG62SAVA
released
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Chromatin tracing (ORCA) of a 3-Mb region at the chr3 locus in mESC CTCF-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Microscope configuration  

The experiments associated with this study are derived from either 33ea326f-a557-4457-becf-55bc860c4bdf or 4fc82c6a-a9cd-43e1-aee8-36db3174b409 microscopes

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX5L4MPMG
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFILD6TDR6
FOF-CT - DNA-spot/trace core (csv)
10.86 MB
File
4DNFIQSUNA94
FOF-CT - spot quality (csv)
3.09 MB
File
4DNFI3S5NRWZ
FOF-CT - trace data (csv)
30.74 kB
Experiment
4DNEXOLS8BYS
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIKXR227H
FOF-CT - DNA-spot/trace core (csv)
14.42 MB
File
4DNFISLKUVSU
FOF-CT - spot quality (csv)
4.11 MB
File
4DNFIQ82TQZ4
FOF-CT - trace data (csv)
42.33 kB
Experiment
4DNEXJ215XWF
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIW3V9CRO
FOF-CT - DNA-spot/trace core (csv)
23.16 MB
File
4DNFIOURMUAS
FOF-CT - spot quality (csv)
6.43 MB
File
4DNFIKSGFRGP
FOF-CT - trace data (csv)
62.12 kB
File
4DNFICUEQHA4
FOF-CT - cell data (csv)
85.86 kB