ExperimentSetReplicate

ExperimentSet4DNESFPAYD4O
released
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in situ Hi-C on bone marrow mononuclear lymphocytes of MCG036

   October 24th, 2024 at 10:15pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
MCG036 Monocytes of bone marrow
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESFPAYD4O
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIBUFDGQF
747.98m
57.474%
21.65%
20.876%
Experiment
4DNEXFIG4LIK
Bio Rep 1, Tec Rep 1
in situ Hi-C on MCG036 Monocytes of bone marrow with MboI
File
Contact List-replicate (pairs)
4DNFIMCB7NLZ
825.82m
57.196%
21.107%
21.697%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESFPAYD4O
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIS7FNRIF
25000; 50000