ExperimentSetReplicate

ExperimentSet4DNESFOADERB
released
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in situ Hi-C on non-heat treated S2 cells with MboI

   October 11th, 2018 at 8:56pm
Source Publication
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.
Ray J, Munn PR, et al., Proceedings of the National Academy of Sciences of the United States of America 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
D. melanogaster
Sample Type 
immortalized cells
Sample 
S2
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESFOADERB
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIKNWM36K
119.21m
45.818%
43.777%
10.405%
Experiment
4DNEXO295N7Z
Bio Rep 1, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Contact List-replicate (pairs)
4DNFI6U9TG2B
65.01m
47.154%
41.238%
11.608%
Experiment
4DNEXQW29MIY
Bio Rep 2, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Contact List-replicate (pairs)
4DNFIZ8QOUA3
54.2m
44.216%
46.821%
8.962%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESFOADERB
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZ1ZVXC8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXO295N7Z
Bio Rep 1, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Alignments (bam)
4DNFIB4G8UAD
148.36m
24.569%
30.046%
1.57%
0.0%
0.865%
Experiment
4DNEXQW29MIY
Bio Rep 2, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Alignments (bam)
4DNFIXZ8PXV6
124.39m
25.534%
29.382%
1.51%
0.0%
1.208%