ExperimentSetReplicate

ExperimentSet4DNESFM3MV3E
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RNA FISH of Hbb-b1 intronic regions on looping factor infected, vector positive sorted, 9h differentiated cells

   September 14th, 2018 at 4:58pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
Stable Transfection
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCm38:7:103826534-103827928 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:7:103826534-103827928 mouse region targeted by Alexa Fluor 594-labeled custom oligos

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXGMTB9PY
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIFUTJ188
csv
37.19 kB
File
4DNFIEIVIELV
coordinates (csv)
9.54 kB
Experiment
4DNEXW6139K3
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIDZ4MN47
csv
29.49 kB
File
4DNFIM12CHFJ
coordinates (csv)
9.08 kB
Experiment
4DNEXUFGEGUJ
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFISIH1FVQ
csv
30.88 kB
File
4DNFI4KDLUVH
coordinates (csv)
9.02 kB