ExperimentSetReplicate

ExperimentSet4DNESFH3EHTU
released

RNA-seq for HFFc6

   April 10th, 2018 at 6:22pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXEMSVDP2
Bio Rep 1, Tec Rep 1
RNA-seq on HFFc6 (Tier 1)
File
Read Positions (bam)
4DNFI8NUSB19
20.36m
18.5m
Experiment
4DNEXGQBPPKP
Bio Rep 1, Tec Rep 2
RNA-seq on HFFc6 (Tier 1)
File
Read Positions (bam)
4DNFIWLJM5YC
25.35m
23.08m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXEMSVDP2
Bio Rep 1, Tec Rep 1
RNA-seq on HFFc6 (Tier 1)
File
Gene Expression (tsv)
4DNFI5MR6C3G
28.78m
708
Experiment
4DNEXGQBPPKP
Bio Rep 1, Tec Rep 2
RNA-seq on HFFc6 (Tier 1)
File
Gene Expression (tsv)
4DNFIF3H5ZCH
36.27m
808