ExperimentSetReplicate

ExperimentSet4DNESFBT9P4O
released
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HiC experiment done on RPMI-7951

   May 5th, 2017 at 6:43pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
RPMI-7951
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESFBT9P4O
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOTABE46
221.21m
33.947%
17.976%
48.077%
Experiment
4DNEXKI2MA3B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on RPMI-7951 with HindIII
File
Contact List-replicate (pairs)
4DNFICPNG5HJ
94.9m
31.298%
18.358%
50.344%
Experiment
4DNEXZI5V7V1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on RPMI-7951 with HindIII
File
Contact List-replicate (pairs)
4DNFI1FP4C98
126.31m
35.937%
17.689%
46.374%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESFBT9P4O
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIW1QGEFN
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKI2MA3B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on RPMI-7951 with HindIII
File
Alignments (bam)
4DNFISZD1LHQ
151.14m
12.769%
15.269%
9.171%
0.001%
0.13%
Experiment
4DNEXZI5V7V1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on RPMI-7951 with HindIII
File
Alignments (bam)
4DNFIII3N6OA
184.74m
11.654%
15.342%
4.635%
0.001%
0.128%