ExperimentSetReplicate

ExperimentSet4DNESFAJCG4W
released
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Multiplexed FISH in lymphoblastoid cell line used as a homozygous reference.

   July 8th, 2025 at 2:41pm
Source Publication
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.
Llimos G, Gardeux V, et al., Nature communications 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
B-lymphocyte
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: GRCh38:17:63486119-63686118 region
Channel
Path
 
ch00
200-kb at 8-kb resolution on chr 17 (AXIN2 VCM) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)
ch01
200-kb at 8-kb resolution on chr 17 (AXIN2 VCM) targeted by oligo probe library (with Cy5-labeled fiducial oligo probes)

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX1MX8Y7L
Bio Rep 1, Tec Rep 1
multiplexed FISH on B-lymphocyte
File
4DNFIZ37CGLR
FOF-CT - DNA-spot/trace core (csv)
538.66 kB
File
4DNFICBJZ2JM
FOF-CT - spot quality (csv)
109.18 kB
File
4DNFIDULRZLF
FOF-CT - trace data (csv)
10.25 kB
Experiment
4DNEX5ICQCRY
Bio Rep 2, Tec Rep 1
multiplexed FISH on B-lymphocyte
File
4DNFIXSTIVTW
FOF-CT - DNA-spot/trace core (csv)
2.21 MB
File
4DNFIT99WH4F
FOF-CT - spot quality (csv)
465.75 kB
File
4DNFI8TFEFP1
FOF-CT - trace data (csv)
34.7 kB