ExperimentSetReplicate

ExperimentSet4DNESETP2XUO
released

in situ Hi-C on gm12878 with HindIII and bio-dATP

   April 9th, 2017 at 5:35pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESETP2XUO
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIX5N2LKH
540.18k
55.601%
29.708%
14.692%
Experiment
4DNEX1S5EP3J
Bio Rep 1, Tec Rep 1
in situ Hi-C on GM12878 with HindIII
File
Contact List-replicate (pairs)
4DNFIA9EJ6Z5
540.18k
55.601%
29.708%
14.692%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESETP2XUO
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI7QWAH57
5000; 10000; 25000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1S5EP3J
Bio Rep 1, Tec Rep 1
in situ Hi-C on GM12878 with HindIII
File
Alignments (bam)
4DNFI6KCIK74
874.73k
27.028%
6.905%
0.088%
4.225%
0.234%