ExperimentSetReplicate

ExperimentSet4DNESERKR4S9
released

RNA-seq on cerebellum immunoprecipitated without electroporation from CD1 mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXGYKGXDG
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFIUNNAHHK
17.89m
16.84m
Experiment
4DNEXI82B8R2
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFIZXOL9X7
20.47m
19.65m
Experiment
4DNEXVU2XYIH
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFIFU3HF4J
19.78m
18.82m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXGYKGXDG
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFIJB6I63Y
9.6m
19.85k
Experiment
4DNEXI82B8R2
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFICP1KO64
11.99m
38.38k
Experiment
4DNEXVU2XYIH
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFIS5ARDC8
9.12m
18.52k