ExperimentSetReplicate

Due to an issue with the 4DN standardized pipeline for CUT&RUN some of the recently released files generated by this pipeline contain additional formatting or may have been incorrectly truncated. This not only interferes with Higlass visualization but may also lead to incorrect interpretation of results. We have restricted access to the files as we work to correct these errors. Please use caution if you have already obtained any of these files and plan to utilize them in your analyses.

This experiment set supercedes 4DNESWH7PH6A, 4DNESVQPN37C, 4DNESVWBIDK7 because existing sets from the same line and using the same antibody that differed only in reaction time (a variable determined to not qualitatively affect the results) were merged into a single replicate set. In addition, new biological replicates were added.

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.