ExperimentSetReplicate

ExperimentSet4DNESEFOMVWG
released
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in situ Hi-C on dTAGV treated hTert-RPE1 FKBP12F36V-Rad21 clone B3 - 24 hr

   October 17th, 2024 at 9:16pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-RAD21 hTERT-RPE-1 - clone B3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEFOMVWG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIZC5VVTA
273.32m
37.722%
48.483%
13.795%
Experiment
4DNEXUJS12AT
Bio Rep 1, Tec Rep 1
in situ Hi-C on dTAG-RAD21 hTERT-RPE-1 - clone B3 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFICLNU8DX
289.69m
37.763%
47.876%
14.361%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESEFOMVWG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI1QAURG4
None