ExperimentSetReplicate

ExperimentSet4DNESEF5YM56
released
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Biological replicates of CTCF ChIP-seq on Scid.adh cells (empty vector)

   October 13th, 2022 at 3:38pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Ctcf mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXRXCHKPW
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on scid.adh
File
Read Positions (bed)
4DNFIMO9XCIB
0.97
0.97
10.35m
Experiment
4DNEX6KZA5MG
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on scid.adh
File
Read Positions (bed)
4DNFIMBL1UBW
0.96
0.95
12.46m