ExperimentSetReplicate

ExperimentSet4DNESEF1PANH
released

ATAC-seq time course of EpiLC differentiation in F121-9 mESCs, 24hr time point

   January 22nd, 2021 at 12:35am

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
in vitro differentiated cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

4 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
File
Read Positions (bed)
4DNFI156M4KP
51.09%
0.86
0.86
33.92m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESEF1PANH
Multiple Experiments
File
Peaks (bigbed)
4DNFIQAPG6GU
123.02k
0.0
1.0
0.16