ExperimentSetReplicate

ExperimentSet4DNESE7Q2487
released
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Biological replicates of CTCF ChIP-seq on TCF1 KO Scid.adh cells

   October 13th, 2022 at 3:38pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: TCF-1 mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX1ANFFZM
Bio Rep 1, Tec Rep 1
ChIP-seq against TCF-1 mouse protein on scid.adh
File
Read Positions (bed)
4DNFI4VGXGY2
0.96
0.96
17.64m
Experiment
4DNEXGRWWPJG
Bio Rep 2, Tec Rep 1
ChIP-seq against TCF-1 mouse protein on scid.adh
File
Read Positions (bed)
4DNFICR4ODEO
0.97
0.96
9.42m