ExperimentSetReplicate

ExperimentSet4DNESE5Q29E1
released
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dilution Hi-C on SMC2-mAID cells in G2 (SMC2-depleted, FACS sorted)

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
G. gallus
Sample Type 
immortalized cells
Sample 
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESE5Q29E1
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7OJOVSK
97.82m
44.237%
34.97%
20.793%
Experiment
4DNEXJE1QDVN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion with HindIII
File
Contact List-replicate (pairs)
4DNFIZM5D8ZX
97.82m
44.237%
34.97%
20.793%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESE5Q29E1
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIJRO7O8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXJE1QDVN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion with HindIII
File
Alignments (bam)
4DNFIBCOBR3E
161.01m
17.242%
9.903%
12.098%
0.002%
0.494%