ExperimentSetReplicate

ExperimentSet4DNESE5KS7LQ
released
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DNA Paint on HFF Htert cells with 3 loci

   November 27th, 2018 at 11:03pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:18:48016594-48189106 region, GRCh38:18:34992711-35151964 region, GRCh38:18:22075002-22239510 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:18:48016594-48189106 region targeted by Cy5-labeled BAC
ch02
GRCh38:18:34992711-35151964 region targeted by Alexa Fluor 488-labeled BAC
ch03
GRCh38:18:22075002-22239510 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESE5KS7LQ
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEX7DMLCOY
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIG54K9DJ
loci distances (txt)
3.73 kB
Experiment
4DNEXHJIAY8O
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI76E4NH3
loci distances (txt)
14.8 kB
Experiment
4DNEX262EJOJ
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI8Z7S1JR
loci distances (txt)
23.75 kB