ExperimentSetReplicate

ExperimentSet4DNESDVZJW63
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 23 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDVZJW63
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI84JZ3C6
1.23 billion
45.062%
43.153%
11.785%
Experiment
4DNEX6ILOPWU
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIUGYI9NH
809.93m
44.275%
45.436%
10.29%
Experiment
4DNEXFJNVL7V
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIGSB8WW8
510.04m
46.229%
37.489%
16.282%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESDVZJW63
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQ57GW6C
None