ExperimentSetReplicate

ExperimentSet4DNESDRL4ZKM
released

H3K4me3 PLAC-seq on Modified WTC-11 (GM25236) with GFP tagged AAVS1 locus - clone 28

   January 30th, 2020 at 9:58pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
induced pluripotent stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me3

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDRL4ZKM
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8TUA4BS
119.22m
53.131%
26.669%
20.2%
Experiment
4DNEXVBSCHRX
Bio Rep 1, Tec Rep 1
PLAC-seq against H3K4me3 on WTC-11 AAVS1-GFP C28
File
Contact List-replicate (pairs)
4DNFIYJBQKZY
119.22m
53.131%
26.669%
20.2%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESDRL4ZKM
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIPIUTQ2C
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXVBSCHRX
Bio Rep 1, Tec Rep 1
PLAC-seq against H3K4me3 on WTC-11 AAVS1-GFP C28
File
Alignments (bam)
4DNFII92243X
242.24m
11.279%
10.908%
21.647%
6.952%
0.073%