ExperimentSetReplicate

ExperimentSet4DNESDRECPY8
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 2.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDRECPY8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOQ39QAT
58.92m
48.779%
20.846%
30.376%
Experiment
4DNEXF2E377C
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIW458FJD
58.92m
48.779%
20.846%
30.376%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXF2E377C
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFI4LIS7BD
108.47m
14.218%
23.805%
7.647%
0.007%
0.225%