ExperimentSetReplicate

ExperimentSet4DNESDRECPY8
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 2.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDRECPY8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOQ39QAT
58.92m
48.779%
20.846%
30.376%
Experiment
4DNEXF2E377C
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIW458FJD
58.92m
48.779%
20.846%
30.376%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESDRECPY8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIT7QBK39
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXF2E377C
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFI4LIS7BD
108.47m
14.218%
23.805%
7.647%
0.007%
0.225%