ExperimentSetReplicate

ExperimentSet4DNESDRC93UG
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 3.25 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDRC93UG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIENSL51I
70.76m
44.637%
16.799%
38.564%
Experiment
4DNEXQSIVAJ4
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIOXPNQY3
70.76m
44.637%
16.799%
38.564%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQSIVAJ4
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIVA3J71F
137.92m
13.533%
23.13%
12.024%
0.005%
0.185%