ExperimentSetReplicate

ExperimentSet4DNESDQCFFSR
released

RNA-seq on cerebellar granule neurons with ctrl vector isolated using syncTRAP at day 8 after in vivo electroporation from dCas9-KRAB mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

28 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXDIXTODF
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIPGUVYD4
19.62m
18.37m
Experiment
4DNEXDDR35UT
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIH3V6QFM
17.14m
16.19m
Experiment
4DNEXXESS9VO
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIIFXHH84
14.48m
13.31m
Experiment
4DNEXK4INDFB
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIVJDX9PJ
22.46m
20.93m
Experiment
4DNEXPUTARZX
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIS6GA4QR
14.31m
13.19m
Experiment
4DNEX8OZ91IY
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI7QZACW7
12.47m
11.81m
Experiment
4DNEX6U3QV4Z
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIRGD3QDA
14.87m
13.81m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXDIXTODF
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFISFN18KF
21.25m
114.01k
Experiment
4DNEXDDR35UT
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI3823NQ3
14.63m
107.91k
Experiment
4DNEXXESS9VO
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI19YIIPU
16.39m
305.86k
Experiment
4DNEXK4INDFB
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIEG3B72V
22.33m
306.31k
Experiment
4DNEXPUTARZX
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI9C3D3FA
15.39m
298.46k
Experiment
4DNEX8OZ91IY
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIDRGJXBH
10.83m
61.21k
Experiment
4DNEX6U3QV4Z
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIS8NMCHP
16.86m
154.36k