ExperimentSetReplicate

ExperimentSet4DNESDO2ZYBM
released
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in situ Hi-C on undifferentiated SOX17-eGFP iCAS9 HUES8 human embryonic stem cells

   May 31st, 2023 at 3:11pm
Source Publication
Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions.
Luo R, Yan J, et al., Nature genetics 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
SOX17-eGFP iCAS9 HUES8
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESDO2ZYBM
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5J3KQTK
146.15m
55.596%
29.853%
14.551%
Experiment
4DNEX51S1MHA
Bio Rep 1, Tec Rep 1
in situ Hi-C on SOX17-eGFP iCAS9 HUES8 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFINMV88W2
146.15m
55.596%
29.853%
14.551%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESDO2ZYBM
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5AQYK7V
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX51S1MHA
Bio Rep 1, Tec Rep 1
in situ Hi-C on SOX17-eGFP iCAS9 HUES8 with Arima - A1, A2
File
Alignments (bam)
4DNFIGDAUIVY
216.03m
8.31%
10.455%
4.0%
9.581%
0.156%