ExperimentSetReplicate

ExperimentSet4DNESDHILYLU
released
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RNA-seq on F121-9 mES cells

   August 13th, 2019 at 4:31pm
Source Publication
Distinct features of nucleolus-associated domains in mouse embryonic stem cells.
Bizhanova A, Yan A, et al., Chromosoma 2020

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F121-9-CASTx129 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

8 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXH7XUZCP
Bio Rep 1, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Read Positions (bam)
4DNFINYQJ8D4
20.73m
18.99m
Experiment
4DNEX1QL8KF2
Bio Rep 2, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Read Positions (bam)
4DNFI2HFSUA8
24.46m
22.35m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXH7XUZCP
Bio Rep 1, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Gene Expression (tsv)
4DNFIPFKK5LM
30.1m
48.65k
Experiment
4DNEX1QL8KF2
Bio Rep 2, Tec Rep 1
RNA-seq on F121-9-CASTx129 (Tier 2)
File
Gene Expression (tsv)
4DNFIC269AEU
35.18m
54.69k