ExperimentSetReplicate

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ExperimentSet4DNESDEJ6TS9
released
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CTCF ChIP-seq on WT hTert-RPE-1

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
RPE-hTERT (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

4 Processed Files

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESDEJ6TS9
Multiple Experiments
File
4DNFIJWU8RY4
peaks (bigbed)
1.83 MB
File
4DNFISLY4D7U
conservative peaks (bigbed)
1.83 MB
File
4DNFIP36F81U
signal fold change (bw)
4.08 GB
Experiment
4DNEXFCP7BEI
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on RPE-hTERT (Tier 2)
File
4DNFIUX1HCR4
read positions (bed)
1.85 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXFCP7BEI
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on RPE-hTERT (Tier 2)
File
Read Positions (bed)
4DNFIUX1HCR4
0.73
0.72
109.89m