ExperimentSetReplicate

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ExperimentSet4DNESDEGWOJG
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 2 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXHV2JQAX
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFIYNJGONQ
read positions (bam)
3.47 GB
File
4DNFIVCRX1L3
read counts (bw)
172.14 MB
File
4DNFIZTJH6U7
gene expression (tsv)
10.58 MB
File
4DNFIQ8V6NXQ
isoform expression (tsv)
30.11 MB
Experiment
4DNEXJQZ1V1Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFI7TT6RE8
read positions (bam)
3.61 GB
File
4DNFID34SXGZ
read counts (bw)
188.92 MB
File
4DNFIAE8LOOH
gene expression (tsv)
10.58 MB
File
4DNFIDCHEMQN
isoform expression (tsv)
30.09 MB
Experiment
4DNEX6JAHBTO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFINVMNS24
read positions (bam)
3.82 GB
File
4DNFI4P88NOU
read counts (bw)
162.77 MB
File
4DNFISNV2O6D
gene expression (tsv)
10.59 MB
File
4DNFIPO6E943
isoform expression (tsv)
30.12 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXHV2JQAX
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIYNJGONQ
50.5m
43.26m
Experiment
4DNEXJQZ1V1Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFI7TT6RE8
52.26m
45.2m
Experiment
4DNEX6JAHBTO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFINVMNS24
54.78m
46.31m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXHV2JQAX
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIZTJH6U7
21.95m
76
Experiment
4DNEXJQZ1V1Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIAE8LOOH
24.85m
59
Experiment
4DNEX6JAHBTO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFISNV2O6D
24.12m
125