ExperimentSetReplicate

ExperimentSet4DNESDEGO621
released
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Biological replicates of CTCF ChIP-seq on asynchronous G1E-ER4 cells

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Ctcf mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXKKQTKQG
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFI25NEOWN
0.74
0.74
13.96m
Experiment
4DNEXK2HDYLD
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIAK6JLU6
0.8
0.81
22.05m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESDEGO621
Multiple Experiments
File
Peaks (bigbed)
4DNFILT99N6I
39.41k
1.09
1.51
0.17